SNP Profiles matching ICS 43

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
1._RUQ_144	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	_	CT	AA
2._RUQ_144	_	AG	GG	CT	_	_	_	GT	_	_	_	_	CT	AA
3._CC_10	_	_	GG	CT	TT	AA	_	GT	CT	CT	AA	AA	CT	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GT	AG	TT	AA	CC	TT	TT	CC
1._RUQ_144	CT	AA	GG	TT	CC	GG	GT	AG	TT	AA	CC	TT	TT	CC
2._RUQ_144	_	_	_	_	CC	GG	GT	_	TT	AA	CC	TT	TT	CC
3._CC_10	CT	AA	GG	TT	CC	GG	GT	AG	CT	_	CC	TT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AG	AA	CT	GG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
1._RUQ_144	AG	AG	AA	CT	GG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
2._RUQ_144	AG	_	AA	CT	GG	AC	CT	GT	AC	_	_	X_X	X_X	X_X
3._CC_10	AG	GG	_	CT	AG	AC	_	GT	CC	TT	GG	X_X	X_X	X_X

Input profile: ICS_43

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

1._ICS_43 RUQ_144

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_43 RUQ_144

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._CC_10

90.9 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25